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%% PNAStmpl.tex
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%% Template file to use for PNAS articles prepared in LaTeX
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%% Version: Apr 14, 2008
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% BASIC CLASS FILE 
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%% PNAStwo for two column articles is called by default.
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%% Uncomment PNASone for single column articles. One column class
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%% and style files are available upon request from pnas@nas.edu.
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%% (uncomment means get rid of the '%' in front of the command)
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%\documentclass{pnasone}
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\documentclass{pnastwo}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% Changing position of text on physical page:
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%% Since not all printers position
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%% the printed page in the same place on the physical page,
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%% you can change the position yourself here, if you need to:
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% \advance\voffset -.5in % Minus dimension will raise the printed page on the 
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                         %  physical page; positive dimension will lower it.
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%% You may set the dimension to the size that you need.
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% OPTIONAL GRAPHICS STYLE FILE
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%% Requires graphics style file (graphicx.sty), used for inserting
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%% .eps files into LaTeX articles.
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%% Note that inclusion of .eps files is for your reference only;
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%% when submitting to PNAS please submit figures separately.
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%% Type into the square brackets the name of the driver program 
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%% that you are using. If you don't know, try dvips, which is the
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%% most common PC driver, or textures for the Mac. These are the options:
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% [dvips], [xdvi], [dvipdf], [dvipdfm], [dvipdfmx], [pdftex], [dvipsone],
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% [dviwindo], [emtex], [dviwin], [pctexps], [pctexwin], [pctexhp], [pctex32],
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% [truetex], [tcidvi], [vtex], [oztex], [textures], [xetex]
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%\usepackage[dvips]{graphicx}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% OPTIONAL POSTSCRIPT FONT FILES
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%% PostScript font files: You may need to edit the PNASoneF.sty
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%% or PNAStwoF.sty file to make the font names match those on your system. 
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%% Alternatively, you can leave the font style file commands commented out
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%% and typeset your article using the default Computer Modern 
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%% fonts (recommended). If accepted, your article will be typeset
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%% at PNAS using PostScript fonts.
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% Choose PNASoneF for one column; PNAStwoF for two column:
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%\usepackage{PNASoneF}
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%\usepackage{PNAStwoF}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% ADDITIONAL OPTIONAL STYLE FILES
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%% The AMS math files are commonly used to gain access to useful features
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%% like extended math fonts and math commands.
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\usepackage{amssymb,amsfonts,amsmath,amsthm}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% OPTIONAL MACRO FILES
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%% Insert self-defined macros here.
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%% \newcommand definitions are recommended; \def definitions are supported
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%\newcommand{\mfrac}[2]{\frac{\displaystyle #1}{\displaystyle #2}}
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%\def\s{\sigma}
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\input{preamble}
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\input{../text/kw_macros}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% Don't type in anything in the following section:
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%%%%%%%%%%%%
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%% For PNAS Only:
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\contributor{Submitted to Proceedings
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of the National Academy of Sciences of the United States of America}
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%\url{www.pnas.org/cgi/doi/10.1073/pnas.0709640104}
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\copyrightyear{2008}
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\issuedate{Issue Date}
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\volume{Volume}
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\issuenumber{Issue Number}
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%%%%%%%%%%%%
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\begin{document}
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% For titles, only capitalize the first letter
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%% \title{Almost sharp fronts for the surface quasi-geostrophic equation}
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\title{The blob complex}
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%% Enter authors via the \author command.  
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%% Use \affil to define affiliations.
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%% (Leave no spaces between author name and \affil command)
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%% Note that the \thanks{} command has been disabled in favor of
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%% a generic, reserved space for PNAS publication footnotes.
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%% \author{<author name>
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%% \affil{<number>}{<Institution>}} One number for each institution.
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%% The same number should be used for authors that
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%% are affiliated with the same institution, after the first time
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%% only the number is needed, ie, \affil{number}{text}, \affil{number}{}
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%% Then, before last author ...
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%% \and
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%% \author{<author name>
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%% \affil{<number>}{}}
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%% For example, assuming Garcia and Sonnery are both affiliated with
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%% Universidad de Murcia:
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%% \author{Roberta Graff\affil{1}{University of Cambridge, Cambridge,
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%% United Kingdom},
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%% Javier de Ruiz Garcia\affil{2}{Universidad de Murcia, Bioquimica y Biologia
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%% Molecular, Murcia, Spain}, \and Franklin Sonnery\affil{2}{}}
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\author{Scott Morrison\affil{1}{Miller Institute for Basic Research, UC Berkeley, CA 94704, USA} \and Kevin Walker\affil{2}{Microsoft Station Q, 2243 CNSI Building, UC Santa Barbara, CA 93106, USA}}
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\contributor{Submitted to Proceedings of the National Academy of Sciences
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of the United States of America}
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%% The \maketitle command is necessary to build the title page.
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\maketitle
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\begin{article}
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\begin{abstract} -- enter abstract text here -- \end{abstract}
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%% When adding keywords, separate each term with a straight line: |
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\keywords{term | term | term}
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%% Optional for entering abbreviations, separate the abbreviation from
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%% its definition with a comma, separate each pair with a semicolon:
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%% for example:
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%% \abbreviations{SAM, self-assembled monolayer; OTS,
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%% octadecyltrichlorosilane}
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% \abbreviations{}
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%% The first letter of the article should be drop cap: \dropcap{}
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%\dropcap{I}n this article we study the evolution of ''almost-sharp'' fronts
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%% Enter the text of your article beginning here and ending before
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%% \begin{acknowledgements}
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%% Section head commands for your reference:
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%% \section{}
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%% \subsection{}
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%% \subsubsection{}
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572
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\section{}
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\nn{
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background: TQFTs are important, historically, semisimple categories well-understood.
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Many new examples arising recently which do not fit this framework, e.g. SW and OS theory.
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These have more complicated gluing formulas (\cite{1003.0598,1005.1248}, etc); 
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it would be nice to give generalized TQFT axioms that encompass these.
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Triangulated categories are important; often calculations are via exact sequences,
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and the standard TQFT constructions are quotients, which destroy exactness.
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A first attempt to deal with this might be to replace all the tensor products in gluing formulas
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with derived tensor products (cite Kh?).
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However, in this approach it's probably difficult to prove invariance of constructions,
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because they depend on explicit presentations of the manifold.
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We'll give a manifestly invariant construction,
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and deduce gluing formulas based on derived (actually, $A_\infty$) tensor products.}
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\section{Definitions}
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\subsection{$n$-categories}
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\nn{
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Axioms for $n$-categories, examples (maps, string diagrams)
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}
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\nn{
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Decide if we need a friendlier, skein-module version.
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}
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\subsection{The blob complex}
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\subsubsection{Decompositions of manifolds}
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\nn{Mention that the axioms for $n$-categories can be stated in terms of decompositions of balls}
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\subsubsection{Homotopy colimits}
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\nn{How can we extend an $n$-category from balls to arbitrary manifolds?}
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\nn{In practice, this gives the old definition}
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\subsubsection{}
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\section{Properties of the blob complex}
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\subsection{Formal properties}
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\label{sec:properties}
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The blob complex enjoys the following list of formal properties.
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\begin{property}[Functoriality]
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\label{property:functoriality}%
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The blob complex is functorial with respect to homeomorphisms.
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That is, 
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for a fixed $n$-dimensional system of fields $\cF$, the association
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\begin{equation*}
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X \mapsto \bc_*(X; \cF)
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\end{equation*}
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is a functor from $n$-manifolds and homeomorphisms between them to chain 
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complexes and isomorphisms between them.
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\end{property}
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As a consequence, there is an action of $\Homeo(X)$ on the chain complex $\bc_*(X; \cF)$; 
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this action is extended to all of $C_*(\Homeo(X))$ in Theorem \ref{thm:CH} below.
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\begin{property}[Disjoint union]
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\label{property:disjoint-union}
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The blob complex of a disjoint union is naturally isomorphic to the tensor product of the blob complexes.
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\begin{equation*}
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\bc_*(X_1 \du X_2) \iso \bc_*(X_1) \tensor \bc_*(X_2)
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\end{equation*}
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\end{property}
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If an $n$-manifold $X$ contains $Y \sqcup Y^\text{op}$ as a codimension $0$ submanifold of its boundary, 
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write $X_\text{gl} = X \bigcup_{Y}\selfarrow$ for the manifold obtained by gluing together $Y$ and $Y^\text{op}$.
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Note that this includes the case of gluing two disjoint manifolds together.
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\begin{property}[Gluing map]
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\label{property:gluing-map}%
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%If $X_1$ and $X_2$ are $n$-manifolds, with $Y$ a codimension $0$-submanifold of $\bdy X_1$, and $Y^{\text{op}}$ a codimension $0$-submanifold of $\bdy X_2$, there is a chain map
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%\begin{equation*}
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%\gl_Y: \bc_*(X_1) \tensor \bc_*(X_2) \to \bc_*(X_1 \cup_Y X_2).
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%\end{equation*}
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Given a gluing $X \to X_\mathrm{gl}$, there is
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a natural map
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\[
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	\bc_*(X) \to \bc_*(X_\mathrm{gl}) 
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\]
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(natural with respect to homeomorphisms, and also associative with respect to iterated gluings).
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\end{property}
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\begin{property}[Contractibility]
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\label{property:contractibility}%
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With field coefficients, the blob complex on an $n$-ball is contractible in the sense 
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that it is homotopic to its $0$-th homology.
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Moreover, the $0$-th homology of balls can be canonically identified with the vector spaces 
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associated by the system of fields $\cF$ to balls.
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\begin{equation*}
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\xymatrix{\bc_*(B^n;\cF) \ar[r]^(0.4){\iso}_(0.4){\text{qi}} & H_0(\bc_*(B^n;\cF)) \ar[r]^(0.6)\iso & A_\cF(B^n)}
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\end{equation*}
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\end{property}
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\nn{Properties \ref{property:functoriality} will be immediate from the definition given in
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\S \ref{sec:blob-definition}, and we'll recall it at the appropriate point there.
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Properties \ref{property:disjoint-union}, \ref{property:gluing-map} and 
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\ref{property:contractibility} are established in \S \ref{sec:basic-properties}.}
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\subsection{Specializations}
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\label{sec:specializations}
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The blob complex is a simultaneous generalization of the TQFT skein module construction and of Hochschild homology.
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\begin{thm}[Skein modules]
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\label{thm:skein-modules}
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The $0$-th blob homology of $X$ is the usual 
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(dual) TQFT Hilbert space (a.k.a.\ skein module) associated to $X$
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by $\cF$.
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\begin{equation*}
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H_0(\bc_*(X;\cF)) \iso A_{\cF}(X)
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\end{equation*}
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\end{thm}
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\begin{thm}[Hochschild homology when $X=S^1$]
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\label{thm:hochschild}
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The blob complex for a $1$-category $\cC$ on the circle is
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quasi-isomorphic to the Hochschild complex.
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\begin{equation*}
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\xymatrix{\bc_*(S^1;\cC) \ar[r]^(0.47){\iso}_(0.47){\text{qi}} & \HC_*(\cC).}
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\end{equation*}
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\end{thm}
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Proposition \ref{thm:skein-modules} is immediate from the definition, and
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Theorem \ref{thm:hochschild} is established by extending the statement to bimodules as well as categories, then verifying that the universal properties of Hochschild homology also hold for $\bc_*(S^1; -)$.
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\subsection{Structure of the blob complex}
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\label{sec:structure}
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In the following $\CH{X} = C_*(\Homeo(X))$ is the singular chain complex of the space of homeomorphisms of $X$, fixed on $\bdy X$.
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\begin{thm}[$C_*(\Homeo(-))$ action]
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\label{thm:CH}\label{thm:evaluation}
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There is a chain map
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\begin{equation*}
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e_X: \CH{X} \tensor \bc_*(X) \to \bc_*(X).
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\end{equation*}
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such that
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\begin{enumerate}
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\item Restricted to $CH_0(X)$ this is the action of homeomorphisms described in Property \ref{property:functoriality}. 
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\item For
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any codimension $0$-submanifold $Y \sqcup Y^\text{op} \subset \bdy X$ the following diagram
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(using the gluing maps described in Property \ref{property:gluing-map}) commutes (up to homotopy).
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\begin{equation*}
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\xymatrix@C+0.3cm{
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     \CH{X} \otimes \bc_*(X)
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        \ar[r]_{e_{X}}  \ar[d]^{\gl^{\Homeo}_Y \otimes \gl_Y}  &
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            \bc_*(X) \ar[d]_{\gl_Y} \\
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     \CH{X \bigcup_Y \selfarrow} \otimes \bc_*(X \bigcup_Y \selfarrow) \ar[r]_<<<<<<<{e_{(X \bigcup_Y \scalebox{0.5}{\selfarrow})}}    & \bc_*(X \bigcup_Y \selfarrow)
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}
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\end{equation*}
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\end{enumerate}
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Futher, this map is associative, in the sense that the following diagram commutes (up to homotopy).
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\begin{equation*}
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\xymatrix{
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\CH{X} \tensor \CH{X} \tensor \bc_*(X) \ar[r]^<<<<<{\id \tensor e_X} \ar[d]^{\compose \tensor \id} & \CH{X} \tensor \bc_*(X) \ar[d]^{e_X} \\
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\CH{X} \tensor \bc_*(X) \ar[r]^{e_X} & \bc_*(X)
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}
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\end{equation*}
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\end{thm}
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Since the blob complex is functorial in the manifold $X$, this is equivalent to having chain maps
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$$ev_{X \to Y} : \CH{X \to Y} \tensor \bc_*(X) \to \bc_*(Y)$$
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for any homeomorphic pair $X$ and $Y$, 
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satisfying corresponding conditions.
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\begin{thm}[Blob complexes of products with balls form an $A_\infty$ $n$-category]
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\label{thm:blobs-ainfty}
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Let $\cC$ be  a topological $n$-category.
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Let $Y$ be an $n{-}k$-manifold. 
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There is an $A_\infty$ $k$-category $\bc_*(Y;\cC)$, defined on each $m$-ball $D$, for $0 \leq m < k$, 
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to be the set $$\bc_*(Y;\cC)(D) = \cC(Y \times D)$$ and on $k$-balls $D$ to be the set 
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$$\bc_*(Y;\cC)(D) = \bc_*(Y \times D; \cC).$$ 
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(When $m=k$ the subsets with fixed boundary conditions form a chain complex.) 
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These sets have the structure of an $A_\infty$ $k$-category, with compositions coming from the gluing map in 
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Property \ref{property:gluing-map} and with the action of families of homeomorphisms given in Theorem \ref{thm:evaluation}.
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\end{thm}
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\begin{rem}
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Perhaps the most interesting case is when $Y$ is just a point; then we have a way of building an $A_\infty$ $n$-category from a topological $n$-category.
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We think of this $A_\infty$ $n$-category as a free resolution.
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\end{rem}
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This result is described in more detail as Example 6.2.8 of \cite{1009.5025}
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The definition is in fact simpler, almost tautological, and we use a different notation, $\cl{\cC}(M)$. The next theorem describes the blob complex for product manifolds, in terms of the $A_\infty$ blob complex of the $A_\infty$ $n$-categories constructed as in the previous example.
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%The notation is intended to reflect the close parallel with the definition of the TQFT skein module via a colimit.
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\newtheorem*{thm:product}{Theorem \ref{thm:product}}
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\begin{thm}[Product formula]
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\label{thm:product}
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Let $W$ be a $k$-manifold and $Y$ be an $n-k$ manifold.
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Let $\cC$ be an $n$-category.
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Let $\bc_*(Y;\cC)$ be the $A_\infty$ $k$-category associated to $Y$ via blob homology (see Example \ref{ex:blob-complexes-of-balls}).
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Then
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\[
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	\bc_*(Y\times W; \cC) \simeq \cl{\bc_*(Y;\cC)}(W).
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\]
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\end{thm}
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The statement can be generalized to arbitrary fibre bundles, and indeed to arbitrary maps
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(see \cite[\S7.1]{1009.5025}).
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Fix a topological $n$-category $\cC$, which we'll omit from the notation.
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Recall that for any $(n-1)$-manifold $Y$, the blob complex $\bc_*(Y)$ is naturally an $A_\infty$ category.
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\begin{thm}[Gluing formula]
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\label{thm:gluing}
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\mbox{}% <-- gets the indenting right
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\begin{itemize}
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\item For any $n$-manifold $X$, with $Y$ a codimension $0$-submanifold of its boundary, the blob complex of $X$ is naturally an
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$A_\infty$ module for $\bc_*(Y)$.
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\item For any $n$-manifold $X_\text{gl} = X\bigcup_Y \selfarrow$, the blob complex $\bc_*(X_\text{gl})$ is the $A_\infty$ self-tensor product of
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$\bc_*(X)$ as an $\bc_*(Y)$-bimodule:
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\begin{equation*}
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\bc_*(X_\text{gl}) \simeq \bc_*(X) \Tensor^{A_\infty}_{\mathclap{\bc_*(Y)}} \selfarrow
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\end{equation*}
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\end{itemize}
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\end{thm}
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\nn{Theorem \ref{thm:product} is proved in \S \ref{ss:product-formula}, and Theorem \ref{thm:gluing} in \S \ref{sec:gluing}.}
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\section{Applications}
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\label{sec:applications}
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Finally, we give two applications of the above machinery.
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\begin{thm}[Mapping spaces]
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\label{thm:map-recon}
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Let $\pi^\infty_{\le n}(T)$ denote the $A_\infty$ $n$-category based on maps 
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$B^n \to T$.
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(The case $n=1$ is the usual $A_\infty$-category of paths in $T$.)
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Then 
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$$\bc_*(X; \pi^\infty_{\le n}(T)) \simeq \CM{X}{T}.$$
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\end{thm}
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   392
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This says that we can recover (up to homotopy) the space of maps to $T$ via blob homology from local data. 
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Note that there is no restriction on the connectivity of $T$ as in \cite[Theorem 3.8.6]{0911.0018}.
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\nn{The proof appears in \S \ref{sec:map-recon}.}
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   397
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\begin{thm}[Higher dimensional Deligne conjecture]
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\label{thm:deligne}
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The singular chains of the $n$-dimensional surgery cylinder operad act on blob cochains.
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Since the little $n{+}1$-balls operad is a suboperad of the $n$-dimensional surgery cylinder operad,
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this implies that the little $n{+}1$-balls operad acts on blob cochains of the $n$-ball.
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\end{thm}
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\nn{See \S \ref{sec:deligne} for a full explanation of the statement, and the proof.}
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parents:
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Scott Morrison <scott@tqft.net>
parents:
diff changeset
   408
%% == end of paper:
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Scott Morrison <scott@tqft.net>
parents:
diff changeset
   409
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Scott Morrison <scott@tqft.net>
parents:
diff changeset
   410
%% Optional Materials and Methods Section
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   411
%% The Materials and Methods section header will be added automatically.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   412
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   413
%% Enter any subheads and the Materials and Methods text below.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   414
%\begin{materials}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   415
% Materials text
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   416
%\end{materials}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   417
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   418
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   419
%% Optional Appendix or Appendices
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   420
%% \appendix Appendix text...
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   421
%% or, for appendix with title, use square brackets:
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   422
%% \appendix[Appendix Title]
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Scott Morrison <scott@tqft.net>
parents:
diff changeset
   423
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   424
\begin{acknowledgments}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   425
-- text of acknowledgments here, including grant info --
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   426
\end{acknowledgments}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   427
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   428
%% PNAS does not support submission of supporting .tex files such as BibTeX.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   429
%% Instead all references must be included in the article .tex document. 
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   430
%% If you currently use BibTeX, your bibliography is formed because the 
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   431
%% command \verb+\bibliography{}+ brings the <filename>.bbl file into your
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   432
%% .tex document. To conform to PNAS requirements, copy the reference listings
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   433
%% from your .bbl file and add them to the article .tex file, using the
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   434
%% bibliography environment described above.  
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   435
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   436
%%  Contact pnas@nas.edu if you need assistance with your
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   437
%%  bibliography.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   438
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   439
% Sample bibliography item in PNAS format:
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   440
%% \bibitem{in-text reference} comma-separated author names up to 5,
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   441
%% for more than 5 authors use first author last name et al. (year published)
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   442
%% article title  {\it Journal Name} volume #: start page-end page.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   443
%% ie,
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   444
% \bibitem{Neuhaus} Neuhaus J-M, Sitcher L, Meins F, Jr, Boller T (1991) 
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   445
% A short C-terminal sequence is necessary and sufficient for the
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   446
% targeting of chitinases to the plant vacuole. 
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   447
% {\it Proc Natl Acad Sci USA} 88:10362-10366.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   448
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   449
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   450
%% Enter the largest bibliography number in the facing curly brackets
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   451
%% following \begin{thebibliography}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   452
572
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   453
%%%% BIBTEX
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   454
\bibliographystyle{alpha}
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   455
\bibliography{../bibliography/bibliography}
566
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   456
572
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   457
%%%% non-BIBTEX
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   458
%\begin{thebibliography}{}
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   459
%
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   460
%\end{thebibliography}
e0f5ec582725 incorporating statements of results in PNAS article
Scott Morrison <scott@tqft.net>
parents: 571
diff changeset
   461
566
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   462
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   463
\end{article}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   464
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   465
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   466
%% Adding Figure and Table References
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   467
%% Be sure to add figures and tables after \end{article}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   468
%% and before \end{document}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   469
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   470
%% For figures, put the caption below the illustration.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   471
%%
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   472
%% \begin{figure}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   473
%% \caption{Almost Sharp Front}\label{afoto}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   474
%% \end{figure}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   475
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   476
%% For Tables, put caption above table
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   477
%%
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   478
%% Table caption should start with a capital letter, continue with lower case
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   479
%% and not have a period at the end
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   480
%% Using @{\vrule height ?? depth ?? width0pt} in the tabular preamble will
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   481
%% keep that much space between every line in the table.
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   482
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   483
%% \begin{table}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   484
%% \caption{Repeat length of longer allele by age of onset class}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   485
%% \begin{tabular}{@{\vrule height 10.5pt depth4pt  width0pt}lrcccc}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   486
%% table text
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   487
%% \end{tabular}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   488
%% \end{table}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   489
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   490
%% For two column figures and tables, use the following:
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   491
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   492
%% \begin{figure*}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   493
%% \caption{Almost Sharp Front}\label{afoto}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   494
%% \end{figure*}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   495
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   496
%% \begin{table*}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   497
%% \caption{Repeat length of longer allele by age of onset class}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   498
%% \begin{tabular}{ccc}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   499
%% table text
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   500
%% \end{tabular}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   501
%% \end{table*}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   502
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   503
\end{document}
33de88ae7b62 PNAS style files, and template
Scott Morrison <scott@tqft.net>
parents:
diff changeset
   504