1 %% PNAStmpl.tex

     2 %% Template file to use for PNAS articles prepared in LaTeX

     3 %% Version: Apr 14, 2008

     4 

     5 

     6 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

     7 %% BASIC CLASS FILE 

     8 %% PNAStwo for two column articles is called by default.

     9 %% Uncomment PNASone for single column articles. One column class

    10 %% and style files are available upon request from pnas@nas.edu.

    11 %% (uncomment means get rid of the '%' in front of the command)

    12 

    13 %\documentclass{pnasone}

    14 \documentclass{pnastwo}

    15 

    16 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    17 %% Changing position of text on physical page:

    18 %% Since not all printers position

    19 %% the printed page in the same place on the physical page,

    20 %% you can change the position yourself here, if you need to:

    21 

    22 % \advance\voffset -.5in % Minus dimension will raise the printed page on the 

    23                          %  physical page; positive dimension will lower it.

    24 

    25 %% You may set the dimension to the size that you need.

    26 

    27 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    28 %% OPTIONAL GRAPHICS STYLE FILE

    29 

    30 %% Requires graphics style file (graphicx.sty), used for inserting

    31 %% .eps files into LaTeX articles.

    32 %% Note that inclusion of .eps files is for your reference only;

    33 %% when submitting to PNAS please submit figures separately.

    34 

    35 %% Type into the square brackets the name of the driver program 

    36 %% that you are using. If you don't know, try dvips, which is the

    37 %% most common PC driver, or textures for the Mac. These are the options:

    38 

    39 % [dvips], [xdvi], [dvipdf], [dvipdfm], [dvipdfmx], [pdftex], [dvipsone],

    40 % [dviwindo], [emtex], [dviwin], [pctexps], [pctexwin], [pctexhp], [pctex32],

    41 % [truetex], [tcidvi], [vtex], [oztex], [textures], [xetex]

    42 

    43 %\usepackage[dvips]{graphicx}

    44 

    45 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    46 %% OPTIONAL POSTSCRIPT FONT FILES

    47 

    48 %% PostScript font files: You may need to edit the PNASoneF.sty

    49 %% or PNAStwoF.sty file to make the font names match those on your system. 

    50 %% Alternatively, you can leave the font style file commands commented out

    51 %% and typeset your article using the default Computer Modern 

    52 %% fonts (recommended). If accepted, your article will be typeset

    53 %% at PNAS using PostScript fonts.

    54 

    55 

    56 % Choose PNASoneF for one column; PNAStwoF for two column:

    57 %\usepackage{PNASoneF}

    58 %\usepackage{PNAStwoF}

    59 

    60 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    61 %% ADDITIONAL OPTIONAL STYLE FILES

    62 

    63 %% The AMS math files are commonly used to gain access to useful features

    64 %% like extended math fonts and math commands.

    65 

    66 \usepackage{amssymb,amsfonts,amsmath}

    67 

    68 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    69 %% OPTIONAL MACRO FILES

    70 %% Insert self-defined macros here.

    71 %% \newcommand definitions are recommended; \def definitions are supported

    72 

    73 %\newcommand{\mfrac}[2]{\frac{\displaystyle #1}{\displaystyle #2}}

    74 %\def\s{\sigma}

    75 

    76 

    77 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    78 %% Don't type in anything in the following section:

    79 %%%%%%%%%%%%

    80 %% For PNAS Only:

    81 \contributor{Submitted to Proceedings

    82 of the National Academy of Sciences of the United States of America}

    83 \url{www.pnas.org/cgi/doi/10.1073/pnas.0709640104}

    84 \copyrightyear{2008}

    85 \issuedate{Issue Date}

    86 \volume{Volume}

    87 \issuenumber{Issue Number}

    88 %%%%%%%%%%%%

    89 

    90 \begin{document}

    91 

    92 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

    93 

    94 

    95 %% For titles, only capitalize the first letter

    96 %% \title{Almost sharp fronts for the surface quasi-geostrophic equation}

    97 

    98 \title{The blob complex}

    99 

   100 

   101 %% Enter authors via the \author command.  

   102 %% Use \affil to define affiliations.

   103 %% (Leave no spaces between author name and \affil command)

   104 

   105 %% Note that the \thanks{} command has been disabled in favor of

   106 %% a generic, reserved space for PNAS publication footnotes.

   107 

   108 %% \author{<author name>

   109 %% \affil{<number>}{<Institution>}} One number for each institution.

   110 %% The same number should be used for authors that

   111 %% are affiliated with the same institution, after the first time

   112 %% only the number is needed, ie, \affil{number}{text}, \affil{number}{}

   113 %% Then, before last author ...

   114 %% \and

   115 %% \author{<author name>

   116 %% \affil{<number>}{}}

   117 

   118 %% For example, assuming Garcia and Sonnery are both affiliated with

   119 %% Universidad de Murcia:

   120 %% \author{Roberta Graff\affil{1}{University of Cambridge, Cambridge,

   121 %% United Kingdom},

   122 %% Javier de Ruiz Garcia\affil{2}{Universidad de Murcia, Bioquimica y Biologia

   123 %% Molecular, Murcia, Spain}, \and Franklin Sonnery\affil{2}{}}

   124 

   125 \author{Scott Morrison\affil{1}{Miller Institute for Basic Research, UC Berkeley, CA 94704, USA} \and Kevin Walker\affil{2}{Microsoft Station Q, 2243 CNSI Building, UC Santa Barbara, CA 93106, USA}}

   126 

   127 \contributor{Submitted to Proceedings of the National Academy of Sciences

   128 of the United States of America}

   129 

   130 %% The \maketitle command is necessary to build the title page.

   131 \maketitle

   132 

   133 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

   134 \begin{article}

   135 

   136 \begin{abstract} -- enter abstract text here -- \end{abstract}

   137 

   138 

   139 %% When adding keywords, separate each term with a straight line: |

   140 \keywords{term | term | term}

   141 

   142 %% Optional for entering abbreviations, separate the abbreviation from

   143 %% its definition with a comma, separate each pair with a semicolon:

   144 %% for example:

   145 %% \abbreviations{SAM, self-assembled monolayer; OTS,

   146 %% octadecyltrichlorosilane}

   147 

   148 % \abbreviations{}

   149 

   150 %% The first letter of the article should be drop cap: \dropcap{}

   151 %\dropcap{I}n this article we study the evolution of ''almost-sharp'' fronts

   152 

   153 %% Enter the text of your article beginning here and ending before

   154 %% \begin{acknowledgements}

   155 %% Section head commands for your reference:

   156 %% \section{}

   157 %% \subsection{}

   158 %% \subsubsection{}

   159 

   160 -- text of paper here --

   161 

   162 %% == end of paper:

   163 

   164 %% Optional Materials and Methods Section

   165 %% The Materials and Methods section header will be added automatically.

   166 

   167 %% Enter any subheads and the Materials and Methods text below.

   168 %\begin{materials}

   169 % Materials text

   170 %\end{materials}

   171 

   172 

   173 %% Optional Appendix or Appendices

   174 %% \appendix Appendix text...

   175 %% or, for appendix with title, use square brackets:

   176 %% \appendix[Appendix Title]

   177 

   178 \begin{acknowledgments}

   179 -- text of acknowledgments here, including grant info --

   180 \end{acknowledgments}

   181 

   182 %% PNAS does not support submission of supporting .tex files such as BibTeX.

   183 %% Instead all references must be included in the article .tex document. 

   184 %% If you currently use BibTeX, your bibliography is formed because the 

   185 %% command \verb+\bibliography{}+ brings the <filename>.bbl file into your

   186 %% .tex document. To conform to PNAS requirements, copy the reference listings

   187 %% from your .bbl file and add them to the article .tex file, using the

   188 %% bibliography environment described above.  

   189 

   190 %%  Contact pnas@nas.edu if you need assistance with your

   191 %%  bibliography.

   192 

   193 % Sample bibliography item in PNAS format:

   194 %% \bibitem{in-text reference} comma-separated author names up to 5,

   195 %% for more than 5 authors use first author last name et al. (year published)

   196 %% article title  {\it Journal Name} volume #: start page-end page.

   197 %% ie,

   198 % \bibitem{Neuhaus} Neuhaus J-M, Sitcher L, Meins F, Jr, Boller T (1991) 

   199 % A short C-terminal sequence is necessary and sufficient for the

   200 % targeting of chitinases to the plant vacuole. 

   201 % {\it Proc Natl Acad Sci USA} 88:10362-10366.

   202 

   203 

   204 %% Enter the largest bibliography number in the facing curly brackets

   205 %% following \begin{thebibliography}

   206 

   207 \begin{thebibliography}{}

   208 

   209 \end{thebibliography}

   210 

   211 \end{article}

   212 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

   213 

   214 %% Adding Figure and Table References

   215 %% Be sure to add figures and tables after \end{article}

   216 %% and before \end{document}

   217 

   218 %% For figures, put the caption below the illustration.

   219 %%

   220 %% \begin{figure}

   221 %% \caption{Almost Sharp Front}\label{afoto}

   222 %% \end{figure}

   223 

   224 %% For Tables, put caption above table

   225 %%

   226 %% Table caption should start with a capital letter, continue with lower case

   227 %% and not have a period at the end

   228 %% Using @{\vrule height ?? depth ?? width0pt} in the tabular preamble will

   229 %% keep that much space between every line in the table.

   230 

   231 %% \begin{table}

   232 %% \caption{Repeat length of longer allele by age of onset class}

   233 %% \begin{tabular}{@{\vrule height 10.5pt depth4pt  width0pt}lrcccc}

   234 %% table text

   235 %% \end{tabular}

   236 %% \end{table}

   237 

   238 %% For two column figures and tables, use the following:

   239 

   240 %% \begin{figure*}

   241 %% \caption{Almost Sharp Front}\label{afoto}

   242 %% \end{figure*}

   243 

   244 %% \begin{table*}

   245 %% \caption{Repeat length of longer allele by age of onset class}

   246 %% \begin{tabular}{ccc}

   247 %% table text

   248 %% \end{tabular}

   249 %% \end{table*}

   250 

   251 \end{document}

   252